SMTL ID : 7ug2.1

Crystal structure of the coiled-coil domain of TRIM75

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

8 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.1: 3 residues within 4Å: Chain A: T.19 Chain B: L.52 Chain C: E.21 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:E.21 ACE.2: 2 residues within 4Å: Chain A: L.51, N.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.54 ACE.4: 3 residues within 4Å: Chain A: L.52 Chain B: T.19 Chain D: E.21 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:E.21 Water bridges: B:T.19 ACE.5: 2 residues within 4Å: Chain B: L.51, N.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.54 ACE.7: 3 residues within 4Å: Chain A: E.21 Chain C: T.19 Chain D: L.52 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.21 ACE.8: 2 residues within 4Å: Chain C: L.51, N.54 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.54 ACE.10: 3 residues within 4Å: Chain B: E.21 Chain C: L.52 Chain D: T.19 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:E.21 Water bridges: D:T.19 ACE.11: 2 residues within 4Å: Chain D: L.51, N.54 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.54

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 5 residues within 4Å: Chain A: D.30 Chain B: E.41, M.45, E.48 Chain C: E.33 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:D.30, B:E.41 Hydrogen bonds: C:E.33 IPA.6: 5 residues within 4Å: Chain A: E.41, M.45, E.48 Chain B: D.30 Chain D: E.33 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: D:E.33 Hydrophobic interactions: A:E.41, B:D.30 IPA.9: 5 residues within 4Å: Chain A: E.33 Chain C: D.30 Chain D: E.41, M.45, E.48 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: C:D.30, D:E.41 Hydrogen bonds: A:E.33 IPA.12: 5 residues within 4Å: Chain B: E.33 Chain C: E.41, M.45, E.48 Chain D: D.30 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: B:E.33 Hydrophobic interactions: C:E.41, D:D.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lou, X. et al., Structural studies of the coiled-coil domain of TRIM75 reveal a tetramer architecture facilitating its E3 ligase complex. Comput Struct Biotechnol J (2022)

Release Date

2023-02-15

Peptides

Tripartite motif-containing protein 75: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Tripartite motif-containing protein 75