SMTL ID : 7ugr.1

Crystal structure of hyperfolder YFP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 5 residues within 4Å: Chain A: E.35, T.44 Ligands: PEG.2, EDO.3, EDO.4 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: K.46, D.209 Ligands: PG4.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.209, A:D.209

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: E.35 Ligands: PG4.1 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: V.12, D.37, K.42 Ligands: PG4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.42 EDO.5: 1 residues within 4Å: Chain A: R.214 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.214 EDO.6: 3 residues within 4Å: Chain A: D.22, K.27, K.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campbell, B.C. et al., Chemically stable fluorescent proteins for advanced microscopy. Nat.Methods (2022)

Release Date

2022-10-26

Peptides

Hyperfolder yellow fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hyperfolder yellow fluorescent protein