- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x XQP: (2R)-2-[(R)-carboxy{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}methoxymethyl]-5-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-3,6-dihydro-2H-1,3-oxazine-4-carboxylic acid(Non-covalent)
XQP.3: 12 residues within 4Å:- Chain A: Y.17, W.23, H.92, D.94, F.130, H.166, S.191, S.193, P.195, H.231
- Ligands: ZN.1, ZN.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:Y.17
- Hydrogen bonds: A:S.191, A:S.193
- Salt bridges: A:H.92, A:H.166, A:H.166, A:H.231
XQP.6: 12 residues within 4Å:- Chain B: Y.17, W.23, H.92, D.94, F.130, H.166, S.191, S.193, P.195, H.231
- Ligands: ZN.4, ZN.5
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:Y.17
- Hydrogen bonds: B:S.191, B:S.193
- Salt bridges: B:H.92, B:H.166, B:H.166, B:H.231
XQP.9: 12 residues within 4Å:- Chain C: Y.17, W.23, H.92, D.94, F.130, H.166, S.191, S.193, P.195, H.231
- Ligands: ZN.7, ZN.8
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:Y.17
- Hydrogen bonds: C:Y.17, C:S.191, C:S.193
- Salt bridges: C:H.92, C:H.166, C:H.166, C:H.231
XQP.12: 12 residues within 4Å:- Chain D: Y.17, W.23, H.92, D.94, F.130, H.166, S.191, S.193, P.195, H.231
- Ligands: ZN.10, ZN.11
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:Y.17
- Hydrogen bonds: D:Y.17, D:S.191, D:S.193
- Salt bridges: D:H.92, D:H.166, D:H.166, D:H.231
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wilamowski, M. et al., Time-resolved beta-lactam cleavage by L1 metallo-beta-lactamase. Nat Commun (2022)
- Release Date
- 2022-04-13
- Peptides
- Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x XQP: (2R)-2-[(R)-carboxy{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}methoxymethyl]-5-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-3,6-dihydro-2H-1,3-oxazine-4-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wilamowski, M. et al., Time-resolved beta-lactam cleavage by L1 metallo-beta-lactamase. Nat Commun (2022)
- Release Date
- 2022-04-13
- Peptides
- Putative metallo-beta-lactamase l1 (Beta-lactamase type ii) (Ec 3.5.2.6) (Penicillinase): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A