SMTL ID : 7uhy.1 (2 other biounits)

Human GATOR2 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-2-2-6-2-2-mer

Ligands

2 x UNK- UNK- UNK- UNK- UNK- UNK- UNK- UNK: Unknown(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.1: 3 residues within 4Å: Chain D: R.555 Chain H: D.14, M.15 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.555 UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK.18: 3 residues within 4Å: Chain M: R.555 Chain Q: D.14, M.15 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:R.555

32 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.756, C.759, C.794, C.797 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.756, A:C.759, A:C.794, A:C.797 ZN.3: 4 residues within 4Å: Chain A: C.804, C.807, H.854, H.857 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.804, A:C.807, A:H.854, A:H.857 ZN.4: 6 residues within 4Å: Chain A: C.846, N.848, C.849, C.875, C.877 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.846, A:C.849, A:C.875, A:C.877 ZN.5: 5 residues within 4Å: Chain A: C.849, H.851, C.868, C.873 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.849, A:H.851, A:C.868, A:C.873 ZN.6: 4 residues within 4Å: Chain B: C.756, C.759, C.794, C.797 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.756, B:C.759, B:C.794, B:C.797 ZN.7: 4 residues within 4Å: Chain B: C.804, C.807, H.854, H.857 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.804, B:C.807, B:H.854, B:H.857 ZN.8: 6 residues within 4Å: Chain B: C.846, N.848, C.849, C.875, C.877 Ligands: ZN.9 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.846, B:C.849, B:C.875, B:C.877 ZN.9: 5 residues within 4Å: Chain B: C.849, H.851, C.868, C.873 Ligands: ZN.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.849, B:H.851, B:C.868, B:C.873 ZN.10: 4 residues within 4Å: Chain C: C.719, C.722, C.733, C.736 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.719, C:C.722, C:C.733, C:C.736 ZN.11: 4 residues within 4Å: Chain C: C.743, C.746, H.765, H.768 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.743, C:C.746, C:H.765, C:H.768 ZN.12: 5 residues within 4Å: Chain C: C.757, G.759, C.760, H.785, C.787 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.757, C:C.760, C:H.785, C:C.787 ZN.13: 4 residues within 4Å: Chain C: C.760, H.762, C.779, C.783 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.760, C:H.762, C:C.779, C:C.783 ZN.14: 4 residues within 4Å: Chain D: C.902, C.905, C.914, C.917 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.902, D:C.905, D:C.914, D:C.917 ZN.15: 4 residues within 4Å: Chain D: C.924, C.927, H.946, H.949 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.924, D:C.927, D:H.946, D:H.949 ZN.16: 5 residues within 4Å: Chain D: C.938, C.941, C.966, C.968 Ligands: ZN.17 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.938, D:C.941, D:C.966, D:C.968 ZN.17: 7 residues within 4Å: Chain D: C.941, H.943, C.960, T.962, C.964, C.968 Ligands: ZN.16 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.941, D:H.943, D:C.960, D:C.964 ZN.19: 4 residues within 4Å: Chain J: C.756, C.759, C.794, C.797 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.756, J:C.759, J:C.794, J:C.797 ZN.20: 4 residues within 4Å: Chain J: C.804, C.807, H.854, H.857 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.804, J:C.807, J:H.854, J:H.857 ZN.21: 6 residues within 4Å: Chain J: C.846, N.848, C.849, C.875, C.877 Ligands: ZN.22 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.846, J:C.849, J:C.875, J:C.877 ZN.22: 5 residues within 4Å: Chain J: C.849, H.851, C.868, C.873 Ligands: ZN.21 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.849, J:H.851, J:C.868, J:C.873 ZN.23: 4 residues within 4Å: Chain K: C.756, C.759, C.794, C.797 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.756, K:C.759, K:C.794, K:C.797 ZN.24: 4 residues within 4Å: Chain K: C.804, C.807, H.854, H.857 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.804, K:C.807, K:H.854, K:H.857 ZN.25: 6 residues within 4Å: Chain K: C.846, N.848, C.849, C.875, C.877 Ligands: ZN.26 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.846, K:C.849, K:C.875, K:C.877 ZN.26: 5 residues within 4Å: Chain K: C.849, H.851, C.868, C.873 Ligands: ZN.25 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.849, K:H.851, K:C.868, K:C.873 ZN.27: 4 residues within 4Å: Chain L: C.719, C.722, C.733, C.736 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.719, L:C.722, L:C.733, L:C.736 ZN.28: 4 residues within 4Å: Chain L: C.743, C.746, H.765, H.768 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.743, L:C.746, L:H.765, L:H.768 ZN.29: 5 residues within 4Å: Chain L: C.757, G.759, C.760, H.785, C.787 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.757, L:C.760, L:H.785, L:C.787 ZN.30: 4 residues within 4Å: Chain L: C.760, H.762, C.779, C.783 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.760, L:H.762, L:C.779, L:C.783 ZN.31: 4 residues within 4Å: Chain M: C.902, C.905, C.914, C.917 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.902, M:C.905, M:C.914, M:C.917 ZN.32: 4 residues within 4Å: Chain M: C.924, C.927, H.946, H.949 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.924, M:C.927, M:H.946, M:H.949 ZN.33: 5 residues within 4Å: Chain M: C.938, C.941, C.966, C.968 Ligands: ZN.34 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.938, M:C.941, M:C.966, M:C.968 ZN.34: 7 residues within 4Å: Chain M: C.941, H.943, C.960, T.962, C.964, C.968 Ligands: ZN.33 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.941, M:H.943, M:C.960, M:C.964

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valenstein, M.L. et al., Structure of the nutrient-sensing hub GATOR2. Nature (2022)

Release Date

2022-07-20

Peptides

GATOR complex protein MIOS: ABJK
GATOR complex protein WDR24: CL
GATOR complex protein WDR59: DM
Isoform B of Nucleoporin SEH1: EFGNOP
Protein SEC13 homolog: HQ
Unknown: IR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

J
A

K
B

C
C

L
C

D
D

M
D

E
E

F
F

G
G

N
E

O
F

P
G

H
H

Q
H

I
I

R
I

GATOR complex protein MIOS

GATOR complex protein WDR24

GATOR complex protein WDR59

Isoform B of Nucleoporin SEH1

Protein SEC13 homolog

Unknown

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