SMTL ID : 7uj5.1 (1 other biounit)

Crystal structure of glutamate racemase from Helicobacter pylori in complex with D-glutamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x DGL: D-GLUTAMIC ACID(Non-covalent)

DGL.1: 15 residues within 4Å: Chain A: D.9, S.10, V.39, P.40, Y.41, G.42, C.72, N.73, T.74, T.118, T.121, V.148, C.183, T.184, H.185 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.9, A:S.10, A:S.10, A:Y.41, A:G.42, A:N.73, A:T.74, A:T.184, A:T.184 Water bridges: A:T.121, A:T.184 DGL.3: 16 residues within 4Å: Chain B: D.9, S.10, G.13, V.39, P.40, Y.41, G.42, C.72, N.73, T.74, T.118, T.121, V.148, C.183, T.184, H.185 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.10, B:S.10, B:Y.41, B:G.42, B:N.73, B:T.74, B:T.74, B:T.184, B:T.184 Water bridges: B:S.10, B:T.121

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: I.151, E.152, N.154, L.156, L.188, E.253, W.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.151, A:N.154, A:W.254 GOL.4: 9 residues within 4Å: Chain B: I.151, E.152, E.153, N.154, L.156, L.188, Q.250, E.253, W.254 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.151, B:N.154, B:W.254 Water bridges: B:Q.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cooling, G.T. et al., Crystal structure of glutamate racemase from Helicobacter pylori in complex with D-glutamate. To Be Published

Release Date

2023-04-05

Peptides

Glutamate racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate racemase

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