SMTL ID : 7ujg.1 (1 other biounit)

Room-temperature X-ray structure of monomeric SARS-CoV-2 main protease catalytic domain (MPro1-196) in complex with GC-376

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x K36: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid(Covalent)

K36.1: 14 residues within 4Å: Chain A: H.37, M.45, F.136, L.137, G.139, S.140, C.141, H.159, H.160, M.161, E.162, H.168, D.183, Q.185 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.37, A:E.162 Hydrogen bonds: A:F.136, A:G.139, A:S.140, A:S.140, A:C.141, A:H.160, A:E.162, A:E.162, A:Q.185 Water bridges: A:Q.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nashed, N.T. et al., Autoprocessing and oxyanion loop reorganization upon GC373 and nirmatrelvir binding of monomeric SARS-CoV-2 main protease catalytic domain. Commun Biol (2022)

Release Date

2022-10-05

Peptides

3C-like proteinase nsp5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C-like proteinase nsp5

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