SMTL ID : 7uk6.1

Apo form of YjfC from Escherichia coli K-12

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.10, R.43, F.352, G.353, D.354, S.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.354, A:S.355 Salt bridges: A:R.10, A:R.43 SO4.2: 2 residues within 4Å: Chain A: R.254, K.255 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.254, A:K.255 SO4.3: 6 residues within 4Å: Chain A: R.108, P.129, T.130, R.314, E.315, R.374 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.130, A:T.130 Salt bridges: A:R.108, A:R.314, A:R.374 SO4.4: 4 residues within 4Å: Chain A: Q.198, S.208, R.209, F.210 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.198, A:Q.198, A:F.210 SO4.5: 3 residues within 4Å: Chain A: R.73, R.280, F.281 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.73 SO4.6: 2 residues within 4Å: Chain A: W.243, R.246 3 PLIP interactions: 3 interactions with chain A Water bridges: A:W.243, A:R.246 Salt bridges: A:R.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pederick, J.L. et al., Escherichia coli YgiC and YjfC Possess Peptide─Spermidine Ligase Activity. Biochemistry (2023)

Release Date

2023-02-15

Peptides

Putative acid--amine ligase YjfC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative acid--amine ligase YjfC

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