SMTL ID : 7um4.1

Crystal structure of inactive 5-HT5AR in complex with AS2674723

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 1 residues within 4Å: Chain A: F.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.120

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 1 residues within 4Å: Chain A: F.312 No protein-ligand interaction detected (PLIP) PEG.4: 3 residues within 4Å: Chain A: N.138, A.142 Ligands: PG4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.138 PEG.6: 2 residues within 4Å: Chain A: L.45 Ligands: PG4.3 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: N.56, V.63, I.141, W.145 Ligands: PEG.4, PEG.6 No protein-ligand interaction detected (PLIP)

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 5 residues within 4Å: Chain A: V.20, L.23, T.24, G.27, F.28 No protein-ligand interaction detected (PLIP)

1 x NN6: ~{N}-[azanyl(azanylidene)methylidene]-5-fluoranyl-8-[2,4,6-tris(fluoranyl)phenyl]-3,4-dihydro-1~{H}-isoquinoline-2-carboxamide(Non-covalent)

NN6.7: 19 residues within 4Å: Chain A: E.80, W.96, D.100, V.101, C.104, T.105, V.173, S.174, R.175, Y.179, A.180, S.183, T.184, A.187, F.280, F.281, E.284, L.303, Y.307 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.187 Hydrogen bonds: A:Y.307, A:Y.307 Salt bridges: A:E.80, A:D.100 pi-Stacking: A:F.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., Inactive and active state structures template selective tools for the human 5-HT 5A receptor. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-07-20

Peptides

5-hydroxytryptamine receptor 5A: A
PGS: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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5-hydroxytryptamine receptor 5A

PGS

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