SMTL ID : 7umm.1

H1 Solomon Islands 2006 hemagglutinin in complex with Ab109

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: N.72, E.74, E.94, N.95, C.98, R.228 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.228 NAG-NAG.2: 6 residues within 4Å: Chain B: N.72, E.74, E.94, N.95, C.98, R.228 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.228 NAG-NAG.3: 6 residues within 4Å: Chain C: N.72, E.74, E.94, N.95, C.98, R.228 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.228

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.62, E.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.94 NAG.5: 3 residues within 4Å: Chain A: P.132, N.133 Chain F: R.85 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.132 Hydrogen bonds: A:N.133 NAG.6: 2 residues within 4Å: Chain B: N.62, E.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.94 NAG.7: 3 residues within 4Å: Chain B: P.132, N.133 Chain D: R.85 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.132 Hydrogen bonds: B:N.133 NAG.8: 2 residues within 4Å: Chain C: N.62, E.94 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.94 NAG.9: 3 residues within 4Å: Chain C: P.132, N.133 Chain E: R.85 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:P.132 Hydrogen bonds: C:N.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caradonna, T.M. et al., An epitope-enriched immunogen expands responses to a conserved viral site. Cell Rep (2022)

Release Date

2022-11-23

Peptides

Hemagglutinin: ABC
ab109 Fab heavy chain: DEF
ab109 Fab light chain: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
I

F
J

G
L

H
M

I
N

Hemagglutinin

ab109 Fab heavy chain

ab109 Fab light chain

Related Entries With Identical Sequence