SMTL ID : 7uoq.1

CRYSTAL STRUCTURE OF HIV-1 INTEGRASE COMPLEXED WITH (2S)-2-(TERT-BUTOXY)-2-(5-{2-[(2-CHLORO-6-M ETHYLPHENYL)METHYL]-1,2,3,4-TETRAHYDROISOQUINOLIN-6-YL}-4- (4,4-DIMETHYLPIPERIDIN-1-YL)-2-METHYLPYRIDIN-3-YL)ACETIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x O20: (2S)-tert-butoxy[(5M)-5-{2-[(2-chloro-6-methylphenyl)methyl]-1,2,3,4-tetrahydroisoquinolin-6-yl}-4-(4,4-dimethylpiperidin-1-yl)-2-methylpyridin-3-yl]acetic acid(Non-covalent)

O20.1: 18 residues within 4Å: Chain A: Q.66, A.69, Y.70, L.73, T.95, T.96, K.98, A.99, A.100, W.102, W.103 Chain B: Q.139, A.140, E.141, H.142, K.144, T.145, M.149 11 PLIP interactions: 7 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Q.66, A:T.96, A:K.98, A:A.99, A:W.102, A:W.102, A:W.103 Hydrogen bonds: B:E.141, B:H.142, B:T.145 Salt bridges: B:H.142 O20.5: 18 residues within 4Å: Chain A: Q.139, A.140, E.141, H.142, K.144, T.145, M.149 Chain B: Q.66, A.69, Y.70, L.73, T.95, T.96, K.98, A.99, A.100, W.102, W.103 11 PLIP interactions: 7 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Q.66, B:T.96, B:K.98, B:A.99, B:W.102, B:W.102, B:W.103 Hydrogen bonds: A:E.141, A:H.142, A:T.145 Salt bridges: A:H.142

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: T.37, H.38, K.130 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.37, A:H.38 Salt bridges: A:H.38, A:K.130 SO4.3: 5 residues within 4Å: Chain A: G.65, Q.66, S.94, T.95, T.96 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.94, A:T.95, A:T.95, A:T.96, A:T.96 Water bridges: A:Q.66 SO4.4: 5 residues within 4Å: Chain A: K.42, R.137, E.141, H.142, L.143 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.137, A:L.143 Water bridges: A:E.40, A:K.144 Salt bridges: A:H.142 SO4.6: 3 residues within 4Å: Chain B: T.37, H.38, K.130 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.37, B:H.38 Salt bridges: B:H.38, B:K.130 SO4.7: 5 residues within 4Å: Chain B: G.65, Q.66, S.94, T.95, T.96 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.94, B:T.95, B:T.95, B:T.96, B:T.96 Water bridges: B:Q.66 SO4.8: 5 residues within 4Å: Chain B: K.42, R.137, E.141, H.142, L.143 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.137, B:L.143 Water bridges: B:K.144 Salt bridges: B:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parcella, K. et al., Discovery and Preclinical Profiling of GSK3839919, a Potent HIV-1 Allosteric Integrase Inhibitor. Acs Med.Chem.Lett. (2022)

Release Date

2022-07-06

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

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