SMTL ID : 7upb.1

Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.414, L.429, K.431 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain D: N.414, L.429, G.430, K.431 No protein-ligand interaction detected (PLIP) NAG.3: 5 residues within 4Å: Chain A: V.118 Chain G: N.414, K.431 Chain I: N.27, H.29 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain I, 1 interactions with chain G Hydrophobic interactions: A:V.118 Hydrogen bonds: I:N.27, I:H.29, G:K.431

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byrne, P.O. et al., Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein. Nat Commun (2023)

Release Date

2023-03-29

Peptides

Fusion glycoprotein F0: ADG
Fab 1H1 heavy chain: BCH
Fab 1H1 light chain: EFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

B
B

C
C

H
H

E
E

F
F

I
L

Fusion glycoprotein F0

Fab 1H1 heavy chain

Fab 1H1 light chain

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