SMTL ID : 7uq1.1

The X-ray crystal structure of the N-terminal domain of Staphylococcus aureus Fatty Acid Kinase A (FakA, residues 1-208) in complex with AMP and a single Mg ion at the dinuclear binding site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 21 residues within 4Å: Chain A: N.52, Y.54, P.55, D.60, T.61, N.64, G.101, N.102, S.103, I.106, V.144, K.146, P.147, V.148, T.151, I.152, L.153, D.205, S.206, G.207 Ligands: MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.52, A:D.60, A:N.64, A:N.102, A:N.102, A:S.103, A:K.146, A:V.148, A:T.151, A:I.152, A:D.205, A:S.206, A:S.206, A:G.207 Water bridges: A:N.52, A:V.56, A:D.60

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: N.102, V.105, I.106, V.144 2 PLIP interactions: 2 interactions with chain A Water bridges: A:M.145, A:M.145

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: N.52, D.58, D.60, T.61 Ligands: AMP.1 5 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: A:D.58, A:D.60, AMP.1, H2O.2, H2O.3 MG.4: 1 residues within 4Å: Chain A: D.60 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.60, H2O.1, H2O.2, H2O.5 MG.5: 1 residues within 4Å: Chain A: K.223 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.223, H2O.4, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Subramanian, C. et al., Domain architecture and catalysis of the Staphylococcus aureus fatty acid kinase. J.Biol.Chem. (2022)

Release Date

2022-05-11

Peptides

Fatty Acid Kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty Acid Kinase A

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