SMTL ID : 7urb.1

Sars-Cov2 Main Protease in complex with CDD-1733

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

2 x O5O: (2P)-2-(isoquinolin-4-yl)-1-[(1s,3R)-3-(methylcarbamoyl)cyclobutyl]-N-{(1S)-1-[4-(trifluoromethyl)phenyl]butyl}-1H-benzimidazole-7-carboxamide(Non-covalent)

O5O.1: 19 residues within 4Å: Chain A: T.26, T.27, L.28, H.42, C.45, M.50, F.141, L.142, N.143, G.144, S.145, C.146, H.164, H.165, M.166, E.167, D.188, R.189, Q.190 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.26, A:L.28, A:H.42, A:N.143 Hydrogen bonds: A:H.42, A:G.144, A:S.145, A:C.146, A:E.167 pi-Stacking: A:H.42 O5O.2: 19 residues within 4Å: Chain B: T.26, T.27, L.28, H.42, C.45, M.50, F.141, L.142, N.143, G.144, S.145, C.146, H.164, H.165, M.166, E.167, D.188, R.189, Q.190 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:T.26, B:L.28, B:H.42, B:N.143 Hydrogen bonds: B:H.42, B:G.144, B:S.145, B:C.146, B:E.167 pi-Stacking: B:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jimmidi, R. et al., DNA-encoded chemical libraries yield non-covalent and non-peptidic SARS-CoV-2 main protease inhibitors. Commun Chem (2023)

Release Date

2023-07-26

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

3C-like proteinase

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