- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.47 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE: FE (III) ION(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 9 residues within 4Å:- Chain A: L.23, S.26, Y.27, L.30, R.58
- Chain B: L.23, S.26, R.58, I.80
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.27, A:Y.27, A:L.30, B:I.80
- Hydrogen bonds: A:S.26, A:S.26
MPD.5: 8 residues within 4Å:- Chain C: L.23, S.26, Y.27, R.58
- Chain E: L.23, S.26, Y.27, R.58
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain E- Hydrophobic interactions: C:L.23, C:Y.27, E:Y.27
- Hydrogen bonds: C:S.26, E:S.26, E:S.26
MPD.7: 9 residues within 4Å:- Chain D: L.23, S.26, Y.27, R.58
- Chain F: L.23, S.26, Y.27, R.58, I.80
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: F:Y.27, F:I.80, D:Y.27
- Hydrogen bonds: F:S.26
MPD.12: 9 residues within 4Å:- Chain G: L.23, S.26, Y.27, L.30, R.58
- Chain H: L.23, S.26, R.58, I.80
6 PLIP interactions:1 interactions with chain H, 5 interactions with chain G- Hydrophobic interactions: H:I.80, G:Y.27, G:Y.27, G:L.30
- Hydrogen bonds: G:S.26, G:S.26
MPD.14: 8 residues within 4Å:- Chain I: L.23, S.26, Y.27, R.58
- Chain K: L.23, S.26, Y.27, R.58
6 PLIP interactions:3 interactions with chain I, 3 interactions with chain K- Hydrophobic interactions: I:L.23, I:Y.27, K:Y.27
- Hydrogen bonds: I:S.26, K:S.26, K:S.26
MPD.16: 9 residues within 4Å:- Chain J: L.23, S.26, Y.27, R.58
- Chain L: L.23, S.26, Y.27, R.58, I.80
4 PLIP interactions:3 interactions with chain L, 1 interactions with chain J- Hydrophobic interactions: L:Y.27, L:I.80, J:Y.27
- Hydrogen bonds: L:S.26
MPD.21: 9 residues within 4Å:- Chain M: L.23, S.26, Y.27, L.30, R.58
- Chain N: L.23, S.26, R.58, I.80
6 PLIP interactions:1 interactions with chain N, 5 interactions with chain M- Hydrophobic interactions: N:I.80, M:Y.27, M:Y.27, M:L.30
- Hydrogen bonds: M:S.26, M:S.26
MPD.23: 8 residues within 4Å:- Chain O: L.23, S.26, Y.27, R.58
- Chain Q: L.23, S.26, Y.27, R.58
6 PLIP interactions:3 interactions with chain O, 3 interactions with chain Q- Hydrophobic interactions: O:L.23, O:Y.27, Q:Y.27
- Hydrogen bonds: O:S.26, Q:S.26, Q:S.26
MPD.25: 9 residues within 4Å:- Chain P: L.23, S.26, Y.27, R.58
- Chain R: L.23, S.26, Y.27, R.58, I.80
4 PLIP interactions:3 interactions with chain R, 1 interactions with chain P- Hydrophobic interactions: R:Y.27, R:I.80, P:Y.27
- Hydrogen bonds: R:S.26
MPD.30: 9 residues within 4Å:- Chain S: L.23, S.26, Y.27, L.30, R.58
- Chain T: L.23, S.26, R.58, I.80
6 PLIP interactions:5 interactions with chain S, 1 interactions with chain T- Hydrophobic interactions: S:Y.27, S:Y.27, S:L.30, T:I.80
- Hydrogen bonds: S:S.26, S:S.26
MPD.32: 8 residues within 4Å:- Chain U: L.23, S.26, Y.27, R.58
- Chain W: L.23, S.26, Y.27, R.58
6 PLIP interactions:3 interactions with chain W, 3 interactions with chain U- Hydrophobic interactions: W:Y.27, U:L.23, U:Y.27
- Hydrogen bonds: W:S.26, W:S.26, U:S.26
MPD.34: 9 residues within 4Å:- Chain V: L.23, S.26, Y.27, R.58
- Chain X: L.23, S.26, Y.27, R.58, I.80
4 PLIP interactions:3 interactions with chain X, 1 interactions with chain V- Hydrophobic interactions: X:Y.27, X:I.80, V:Y.27
- Hydrogen bonds: X:S.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mubarak, S.S.M. et al., Biochemical Characterization of Caenorhabditis elegans Ferritins. Biochemistry (2023)
- Release Date
- 2023-04-26
- Peptides
- Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GE
IF
KG
AH
CI
EJ
GK
IL
KM
AN
CO
EP
GQ
IR
KS
AT
CU
EV
GW
IX
K
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.47 Å
- Oligo State
- homo-24-mer
- Ligands
- 24 x FE: FE (III) ION(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mubarak, S.S.M. et al., Biochemical Characterization of Caenorhabditis elegans Ferritins. Biochemistry (2023)
- Release Date
- 2023-04-26
- Peptides
- Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GE
IF
KG
AH
CI
EJ
GK
IL
KM
AN
CO
EP
GQ
IR
KS
AT
CU
EV
GW
IX
K