SMTL ID : 7urq.1

Crystal Structure of SARS-CoV-2 S delta variant receptor-binding domain (RBD) in complex CoV11 Fab crystal form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.22, G.23, N.27 No protein-ligand interaction detected (PLIP)

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 8 residues within 4Å: Chain A: K.142, S.143 Chain B: S.30, R.31, S.53, G.54, R.71, N.73 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.53, B:S.53, B:N.73 Salt bridges: B:R.31, B:R.71, B:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolbert, W.D. et al., The molecular basis of the neutralization breadth of the RBD-specific antibody CoV11. Front Immunol (2023)

Release Date

2022-05-04

Peptides

Spike protein S1: A
COV11 Fab HEAVY CHAIN: B
COV11 Fab LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

COV11 Fab HEAVY CHAIN

COV11 Fab LIGHT CHAIN

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