SMTL ID : 7us4.1

Sars-Cov2 Main Protease in complex with CDD-1819

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

2 x O69: (2P)-2-(isoquinolin-4-yl)-1-[(1s,3R)-3-(methylcarbamoyl)cyclobutyl]-N-[(1S)-1-(naphthalen-2-yl)ethyl]-1H-benzimidazole-7-carboxamide(Non-covalent)

O69.1: 16 residues within 4Å: Chain A: T.27, H.42, C.45, M.50, F.141, L.142, N.143, G.144, S.145, C.146, H.164, H.165, M.166, E.167, R.189, Q.190 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.50, A:N.143, A:M.166 Hydrogen bonds: A:H.42, A:G.144, A:S.145, A:C.146, A:E.167 pi-Stacking: A:H.42 O69.2: 16 residues within 4Å: Chain B: T.27, H.42, C.45, M.50, F.141, L.142, N.143, G.144, S.145, C.146, H.164, H.165, M.166, E.167, R.189, Q.190 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:M.50, B:N.143, B:M.166 Hydrogen bonds: B:H.42, B:G.144, B:S.145, B:C.146, B:E.167 pi-Stacking: B:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jimmidi, R. et al., DNA-encoded chemical libraries yield non-covalent and non-peptidic SARS-CoV-2 main protease inhibitors. Commun Chem (2023)

Release Date

2023-07-26

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

Related Entries With Identical Sequence