SMTL ID : 7usf.1 (2 other biounits)

Mouse mammary tumor virus strand transfer complex intasome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.9, A:H.13, A:C.37, A:C.40 ZN.3: 4 residues within 4Å: Chain B: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.9, B:H.13, B:C.37, B:C.40 ZN.4: 5 residues within 4Å: Chain C: H.9, H.13, C.37, N.39, C.40 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.9, C:H.13, C:C.37, C:C.40 ZN.5: 4 residues within 4Å: Chain D: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.9, D:H.13, D:C.37, D:C.40 ZN.6: 4 residues within 4Å: Chain H: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.9, H:H.13, H:C.37, H:C.40 ZN.8: 4 residues within 4Å: Chain I: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.9, I:H.13, I:C.37, I:C.40 ZN.9: 5 residues within 4Å: Chain J: H.9, H.13, C.37, N.39, C.40 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.9, J:H.13, J:C.37, J:C.40 ZN.10: 4 residues within 4Å: Chain K: H.9, H.13, C.37, C.40 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.9, K:H.13, K:C.37, K:C.40

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.65, D.122 Chain F: C.21 Chain N: G.16 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.65, A:D.65, A:D.122 CA.7: 4 residues within 4Å: Chain G: G.16 Chain H: D.65, D.122 Chain M: C.21 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.65, H:D.65, H:D.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jozwik, I.K. et al., B-to-A transition in target DNA during retroviral integration. Nucleic Acids Res. (2022)

Release Date

2022-08-24

Peptides

Integrase: ABCDHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

H
A

I
B

J
C

K
D

Integrase

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