SMTL ID : 7usg.1

BRD2-BD2 in complex with MDP5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x O6O: (8M)-8-(2,3-dihydro-1,4-benzodioxin-6-yl)-2-(morpholin-4-yl)-4H-1-benzopyran-4-one(Non-covalent)

O6O.1: 10 residues within 4Å: Chain A: W.26, P.27, F.28, V.32, L.37, L.39, C.81, N.85, H.89, V.91 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.27, A:F.28, A:V.32, A:L.37, A:V.91 Hydrogen bonds: A:N.85 pi-Stacking: A:W.26

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: W.26 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain A: K.83, Y.84, N.85, P.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.83

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 1 residues within 4Å: Chain A: R.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.75 Water bridges: A:A.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sethi, B. et al., Targeting BRD4 and PI3K signaling pathways for the treatment of medulloblastoma. J Control Release (2023)

Release Date

2023-01-18

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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