SMTL ID : 7ush.1

BRD2-BD2 in complex with SF2523

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x 82V: 3-(2,3-dihydro-1,4-benzodioxin-6-yl)-5-(morpholin-4-yl)-7H-thieno[3,2-b]pyran-7-one(Non-covalent)

82V.1: 9 residues within 4Å: Chain A: W.26, P.27, V.32, L.37, L.39, C.81, N.85, H.89, V.91 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.27, A:L.37, A:L.37 Hydrogen bonds: A:N.85 pi-Stacking: A:W.26

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: K.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.83, A:K.83 EDO.3: 5 residues within 4Å: Chain A: K.83, Y.84, N.85, P.86, P.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.84 EDO.4: 1 residues within 4Å: Chain A: W.26 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: L.17, S.18, K.19, A.22, Y.29 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.18 Water bridges: A:K.19 EDO.6: 2 residues within 4Å: Chain A: P.31, V.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sethi, B. et al., Targeting BRD4 and PI3K signaling pathways for the treatment of medulloblastoma. J Control Release (2023)

Release Date

2023-01-18

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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