SMTL ID : 7usm.1

Integrin alphaM/beta2 ectodomain

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: Y.356, A.359, F.373, N.375, M.376, R.378, M.383 No protein-ligand interaction detected (PLIP)

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.576, T.578, D.580, L.582, D.584 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.576, A:D.580, A:L.582, A:D.584, A:D.584 CA.3: 5 residues within 4Å: Chain A: D.513, N.515, D.517, L.519, D.521 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.517, A:L.519, A:D.521, A:D.521 CA.4: 5 residues within 4Å: Chain A: D.449, D.451, N.453, S.455, D.457 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.451, A:D.451, A:S.455, A:D.457 CA.13: 4 residues within 4Å: Chain B: S.116, D.119, D.120, E.325 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:S.116, B:D.119, B:D.120, B:E.325

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.1034 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain A: I.38, N.70, H.94 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.94 Hydrogen bonds: A:N.70 NAG.7: 7 residues within 4Å: Chain A: T.659, Y.660, D.661, R.684, N.718, F.719, S.720 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.661, A:D.661, A:R.684 NAG.8: 5 residues within 4Å: Chain A: N.785, K.814, S.816, N.864 Ligands: NAG.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.814, A:K.814, A:N.864 NAG.9: 5 residues within 4Å: Chain A: M.771, N.785, T.817, N.864 Ligands: NAG.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.817 Hydrogen bonds: A:N.864 NAG.10: 5 residues within 4Å: Chain A: F.805, K.882, N.884, T.886, R.893 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.886 Hydrogen bonds: A:K.882, A:R.893, A:R.893, A:R.893 NAG.11: 3 residues within 4Å: Chain A: V.1003, N.1005, S.1007 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.1007 NAG.12: 4 residues within 4Å: Chain A: H.916, Q.938, E.1026, N.1028 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.1026 Hydrogen bonds: A:N.1028 NAG.14: 3 residues within 4Å: Chain B: A.92, N.94, T.388 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goldsmith, J.A. et al., Structural basis for non-canonical integrin engagement by Bordetella adenylate cyclase toxin. Cell Rep (2022)

Release Date

2022-08-17

Peptides

Integrin alpha-M: A
Integrin beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrin alpha-M

Integrin beta

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