- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.10 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 2 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
PEE.3: 17 residues within 4Å:- Chain A: F.142, K.146, Y.148, L.149, I.150, P.151, E.153, R.175, W.176, V.178, F.179, I.182, Y.276, K.284
- Chain C: E.114
- Ligands: D12.8, ZFC.19
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:F.142, A:I.150, A:F.179, A:F.179, A:I.182, A:Y.276
- Hydrogen bonds: A:R.175, C:E.114
- Salt bridges: A:R.175, A:K.284
PEE.31: 17 residues within 4Å:- Chain B: F.142, K.146, Y.148, L.149, I.150, P.151, E.153, R.175, W.176, V.178, F.179, I.182, Y.276, K.284
- Chain E: E.114
- Ligands: D12.36, ZFC.48
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain E- Hydrophobic interactions: B:F.142, B:I.150, B:F.179, B:F.179, B:I.182, B:Y.276
- Hydrogen bonds: B:R.175, E:E.114
- Salt bridges: B:R.175, B:K.284
- 2 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
3PE.4: 19 residues within 4Å:- Chain A: K.155, R.158, L.684, I.685, I.688, L.692, Y.762, I.763, W.766
- Chain D: L.36, I.39, V.40, C.43, C.44, M.46, R.47
- Ligands: ZFC.6, PLM.62, PLM.63
12 PLIP interactions:8 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:L.684, A:I.685, A:L.692, A:L.692, A:I.763, D:L.36, D:L.36, D:I.39
- Hydrogen bonds: A:R.158, A:Y.762, D:M.46
- Salt bridges: A:K.155
3PE.32: 17 residues within 4Å:- Chain B: K.155, R.158, L.684, I.685, I.688, L.692, Y.762, I.763, W.766
- Chain F: L.36, I.39, V.40, C.44, M.46
- Ligands: ZFC.34, PLM.69, PLM.70
12 PLIP interactions:8 interactions with chain B, 4 interactions with chain F- Hydrophobic interactions: B:L.684, B:I.685, B:L.692, B:L.692, B:I.763, F:L.36, F:L.36, F:I.39
- Hydrogen bonds: B:R.158, B:Y.762, F:M.46
- Salt bridges: B:K.155
- 34 x ZFC: undecan-1-ol(Non-covalent)(Covalent)
ZFC.5: 1 residues within 4Å:- Chain A: A.808
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:A.808
ZFC.6: 6 residues within 4Å:- Chain A: V.680, L.684, I.752, K.756
- Ligands: 3PE.4, D12.9
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.680, A:L.684, A:I.752, A:K.756
ZFC.14: 3 residues within 4Å:- Chain A: L.797, L.798
- Chain B: F.860
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.797, A:L.798, B:F.860
ZFC.15: 5 residues within 4Å:- Chain A: L.433, S.784, N.786, F.787, I.794
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.433, A:F.787, A:F.787, A:I.794
ZFC.16: 5 residues within 4Å:- Chain A: I.441, I.444, F.445, F.448, F.805
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.441, A:I.444, A:F.445, A:F.448, A:F.805
ZFC.17: 5 residues within 4Å:- Chain A: N.360, T.423, R.426, R.431
- Ligands: ZFC.25
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:R.431
ZFC.18: 2 residues within 4Å:- Chain A: G.368
- Ligands: R16.11
No protein-ligand interaction detected (PLIP)ZFC.19: 6 residues within 4Å:- Chain A: M.183, I.187, V.190, F.191, Y.276
- Ligands: PEE.3
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.190, A:F.191, A:Y.276
ZFC.20: 6 residues within 4Å:- Chain A: F.191, P.195, L.198, I.258, Y.260
- Ligands: ZFC.21
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.191, A:P.195, A:P.195, A:L.198, A:I.258, A:Y.260
ZFC.21: 3 residues within 4Å:- Chain A: I.258
- Ligands: CLR.10, ZFC.20
No protein-ligand interaction detected (PLIP)ZFC.22: 1 residues within 4Å:- Chain A: E.832
No protein-ligand interaction detected (PLIP)ZFC.23: 1 residues within 4Å:- Chain A: F.686
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.686
ZFC.25: 5 residues within 4Å:- Chain A: R.426, G.430, I.434, T.437
- Ligands: ZFC.17
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.434, A:I.434
ZFC.26: 3 residues within 4Å:- Chain A: R.422, R.426, S.782
No protein-ligand interaction detected (PLIP)ZFC.33: 1 residues within 4Å:- Chain B: A.808
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:A.808
ZFC.34: 6 residues within 4Å:- Chain B: V.680, L.684, I.752, K.756
- Ligands: 3PE.32, D12.37
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:V.680, B:L.684, B:I.752, B:K.756
ZFC.43: 3 residues within 4Å:- Chain A: F.860
- Chain B: L.797, L.798
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.797, B:L.798, A:F.860
ZFC.44: 5 residues within 4Å:- Chain B: L.433, S.784, N.786, F.787, I.794
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.433, B:F.787, B:F.787, B:I.794
ZFC.45: 5 residues within 4Å:- Chain B: I.441, I.444, F.445, F.448, F.805
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.441, B:I.444, B:F.445, B:F.448, B:F.805
ZFC.46: 5 residues within 4Å:- Chain B: N.360, T.423, R.426, R.431
- Ligands: ZFC.54
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:R.431
ZFC.47: 2 residues within 4Å:- Chain B: G.368
- Ligands: R16.40
No protein-ligand interaction detected (PLIP)ZFC.48: 6 residues within 4Å:- Chain B: M.183, I.187, V.190, F.191, Y.276
- Ligands: PEE.31
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.190, B:F.191, B:Y.276
ZFC.49: 5 residues within 4Å:- Chain B: F.191, P.195, L.198, I.258
- Ligands: ZFC.50
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.191, B:P.195, B:P.195, B:L.198, B:I.258
ZFC.50: 3 residues within 4Å:- Chain B: I.258
- Ligands: CLR.38, ZFC.49
No protein-ligand interaction detected (PLIP)ZFC.51: 1 residues within 4Å:- Chain B: E.832
No protein-ligand interaction detected (PLIP)ZFC.52: 1 residues within 4Å:- Chain B: F.686
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.686
ZFC.54: 5 residues within 4Å:- Chain B: R.426, G.430, I.434, T.437
- Ligands: ZFC.46
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.434, B:I.434
ZFC.55: 3 residues within 4Å:- Chain B: R.422, R.426, S.782
No protein-ligand interaction detected (PLIP)ZFC.59: 2 residues within 4Å:- Chain D: M.26, A.29
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:A.29
ZFC.60: 3 residues within 4Å:- Chain D: A.29, G.32, G.33
No protein-ligand interaction detected (PLIP)ZFC.61: 3 residues within 4Å:- Chain D: L.36, V.40
- Ligands: PLM.62
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:L.36
ZFC.66: 2 residues within 4Å:- Chain F: M.26, A.29
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:A.29
ZFC.67: 3 residues within 4Å:- Chain F: A.29, G.32, G.33
No protein-ligand interaction detected (PLIP)ZFC.68: 3 residues within 4Å:- Chain F: L.36, V.40
- Ligands: PLM.69
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:L.36
- 12 x D12: DODECANE(Non-covalent)
D12.7: 1 residues within 4Å:- Chain A: V.193
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.193
D12.8: 4 residues within 4Å:- Chain A: P.151, W.152, Y.762
- Ligands: PEE.3
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.151, A:W.152, A:W.152
D12.9: 2 residues within 4Å:- Chain A: Y.234
- Ligands: ZFC.6
No protein-ligand interaction detected (PLIP)D12.12: 3 residues within 4Å:- Chain A: I.694, R.698, F.717
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.694, A:R.698, A:F.717
D12.13: 4 residues within 4Å:- Chain A: I.371, I.375, F.445, E.449
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.371, A:F.445, A:F.445
D12.24: 5 residues within 4Å:- Chain A: L.228, W.232, H.233, L.389, F.390
No protein-ligand interaction detected (PLIP)D12.35: 2 residues within 4Å:- Chain B: L.189, V.193
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.189, B:V.193
D12.36: 4 residues within 4Å:- Chain B: P.151, W.152, Y.762
- Ligands: PEE.31
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:P.151, B:W.152, B:W.152
D12.37: 3 residues within 4Å:- Chain B: V.231, Y.234
- Ligands: ZFC.34
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:V.231
D12.41: 3 residues within 4Å:- Chain B: I.694, R.698, F.717
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.694, B:R.698, B:F.717
D12.42: 3 residues within 4Å:- Chain B: I.371, I.375, F.445
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.371, B:F.445, B:F.445
D12.53: 5 residues within 4Å:- Chain B: L.228, W.232, H.233, L.389, F.390
No protein-ligand interaction detected (PLIP)- 2 x CLR: CHOLESTEROL(Non-covalent)
CLR.10: 10 residues within 4Å:- Chain A: F.191, K.259, Y.260, A.261, L.264, A.265, M.268, T.272, E.832
- Ligands: ZFC.21
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.191, A:F.191, A:F.191, A:Y.260, A:M.268, A:T.272
CLR.38: 10 residues within 4Å:- Chain B: F.191, K.259, Y.260, A.261, L.264, A.265, M.268, T.272, E.832
- Ligands: ZFC.50
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.191, B:F.191, B:F.191, B:Y.260, B:M.268, B:T.272
- 4 x R16: HEXADECANE(Non-covalent)
R16.11: 4 residues within 4Å:- Chain A: L.367, I.371, I.375
- Ligands: ZFC.18
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.367, A:I.371, A:I.371, A:I.375
R16.28: 4 residues within 4Å:- Chain A: L.282, A.286
- Chain B: L.859, Y.866
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.282, A:A.286
R16.39: 4 residues within 4Å:- Chain A: L.859, Y.866
- Chain B: L.282, A.286
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.282, B:A.286
R16.40: 4 residues within 4Å:- Chain B: L.367, I.371, I.375
- Ligands: ZFC.47
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.367, B:I.371, B:I.371, B:I.375
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x PLM: PALMITIC ACID(Non-covalent)(Covalent)
PLM.62: 7 residues within 4Å:- Chain A: I.755, I.758, I.759, Y.762
- Chain D: C.44
- Ligands: 3PE.4, ZFC.61
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.755, A:I.758, A:I.758, A:I.759, A:Y.762, A:Y.762
PLM.63: 5 residues within 4Å:- Chain A: L.692, L.696
- Chain D: I.39, C.43
- Ligands: 3PE.4
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.692, A:L.696
PLM.69: 6 residues within 4Å:- Chain B: I.755, I.758, I.759
- Chain F: C.44
- Ligands: 3PE.32, ZFC.68
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.755, B:I.758, B:I.759
PLM.70: 5 residues within 4Å:- Chain B: L.692, L.696
- Chain F: I.39, C.43
- Ligands: 3PE.32
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.692, B:L.696
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeong, H. et al., Structures of the TMC-1 complex illuminate mechanosensory transduction. Nature (2022)
- Release Date
- 2022-10-19
- Peptides
- Transmembrane channel-like protein 1: AB
CALMyrin (Calcium and Integrin Binding protein) homolog: CE
Transmembrane inner ear expressed protein: DF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
ED
DF
F - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.10 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 2 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
- 2 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
- 34 x ZFC: undecan-1-ol(Non-covalent)(Covalent)
- 12 x D12: DODECANE(Non-covalent)
- 2 x CLR: CHOLESTEROL(Non-covalent)
- 4 x R16: HEXADECANE(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x PLM: PALMITIC ACID(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeong, H. et al., Structures of the TMC-1 complex illuminate mechanosensory transduction. Nature (2022)
- Release Date
- 2022-10-19
- Peptides
- Transmembrane channel-like protein 1: AB
CALMyrin (Calcium and Integrin Binding protein) homolog: CE
Transmembrane inner ear expressed protein: DF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
ED
DF
F - Membrane
-
We predict this structure to be a membrane protein.