SMTL ID : 7uu4.1

Crystal structure of APOBEC3G complex with ssRNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.72, E.74, C.104, C.107 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.72, A:C.104, A:C.107, H2O.2 ZN.2: 4 residues within 4Å: Chain A: H.260, C.290, C.293 Ligands: SO4.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.260, A:C.290, A:C.293

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 10 residues within 4Å: Chain A: H.219, T.221, H.260, W.287, S.288, P.289, C.290, C.293, Y.317 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.290 Water bridges: A:T.221, A:T.221 Salt bridges: A:H.219, A:H.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural basis of sequence-specific RNA recognition by the antiviral factor APOBEC3G. Nat Commun (2022)

Release Date

2023-01-11

Peptides

DNA dC->dU-editing enzyme APOBEC-3G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA dC->dU-editing enzyme APOBEC-3G

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