SMTL ID : 7uu5.1

Crystal structure of APOBEC3G complex with 5'-Overhang dsRNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.72, C.104, C.107 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.72, A:C.104, A:C.107 ZN.2: 3 residues within 4Å: Chain A: H.260, C.290, C.293 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.290, A:C.293 ZN.3: 4 residues within 4Å: Chain B: H.72, E.74, C.104, C.107 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.72, B:E.74, B:C.104, B:C.107 ZN.4: 3 residues within 4Å: Chain B: H.260, C.290, C.293 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.260, B:C.290, B:C.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structural basis of sequence-specific RNA recognition by the antiviral factor APOBEC3G. Nat Commun (2022)

Release Date

2023-01-11

Peptides

DNA dC->dU-editing enzyme APOBEC-3G: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA dC->dU-editing enzyme APOBEC-3G