SMTL ID : 7uwl.1

Structure of the IL-25-IL-17RB-IL-17RA ternary complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain C: E.178, N.180, R.215, A.216, S.217 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain C: N.166, R.215 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain D: E.178, N.180, R.215, A.216, S.217, C.254 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain D: N.166, R.215 No protein-ligand interaction detected (PLIP)

14 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 7 residues within 4Å: Chain A: N.111, L.136, R.138 Chain D: F.77, Q.78, S.79, Y.80 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:N.111, A:R.138, D:Y.80 Hydrophobic interactions: D:Y.80 NAG.6: 6 residues within 4Å: Chain B: N.111, L.136, R.138 Chain C: Q.78, S.79, Y.80 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:Y.80, B:N.111, B:R.138 NAG.7: 1 residues within 4Å: Chain C: N.139 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.139 NAG.8: 4 residues within 4Å: Chain C: E.34, N.50, S.105, I.107 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.107 Hydrogen bonds: C:E.34, C:S.105 NAG.9: 6 residues within 4Å: Chain C: Q.6, C.7, G.8, R.84, C.85, N.86 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.8, C:R.84, C:R.84 NAG.10: 4 residues within 4Å: Chain D: C.7, G.8, R.84, N.86 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.84 NAG.11: 2 residues within 4Å: Chain B: Y.67 Chain D: N.139 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.139 NAG.12: 4 residues within 4Å: Chain D: E.34, N.50, S.105, I.107 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:I.107 Hydrogen bonds: D:S.105 NAG.13: 3 residues within 4Å: Chain E: M.165, W.192, N.193 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.193 NAG.14: 3 residues within 4Å: Chain E: R.186, R.231, N.233 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:R.186, E:R.186, E:R.231, E:N.233 NAG.15: 2 residues within 4Å: Chain E: N.35, I.136 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:I.136 NAG.16: 1 residues within 4Å: Chain F: N.35 No protein-ligand interaction detected (PLIP) NAG.17: 4 residues within 4Å: Chain F: M.165, W.192, N.193, H.229 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.193 NAG.18: 3 residues within 4Å: Chain F: R.186, R.231, N.233 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.186, F:R.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson, S.C. et al., Organizing structural principles of the IL-17 ligand-receptor axis. Nature (2022)

Release Date

2022-07-27

Peptides

Interleukin-25: AB
Interleukin-17 receptor B: CD
Interleukin-17 receptor A: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Interleukin-25

Interleukin-17 receptor B

Interleukin-17 receptor A

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