SMTL ID : 7uxq.1 (1 other biounit)

Structure of PDL1 in complex with FP28135, a Helicon Polypeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: A.36, Y.102 No protein-ligand interaction detected (PLIP) EDO.2: 2 residues within 4Å: Chain A: K.25, L.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.25, A:L.78 EDO.3: 2 residues within 4Å: Chain A: K.108, R.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.109, A:R.109 EDO.4: 4 residues within 4Å: Chain A: R.70, L.72, K.73, D.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.73, A:D.74, A:D.74

1 x WHL: N,N'-(1,4-phenylene)diacetamide(Covalent)

WHL.5: 4 residues within 4Å: Chain B: C.8, A.11, A.12, C.15 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:A.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, K. et al., De novo mapping of alpha-helix recognition sites on protein surfaces using unbiased libraries. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-12-28

Peptides

Programmed cell death 1 ligand 1: A
FP28135: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Programmed cell death 1 ligand 1

FP28135

Related Entries With Identical Sequence