SMTL ID : 7uxv.1

human triosephosphate isomerase mutant G122R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x PGA: 2-PHOSPHOGLYCOLIC ACID(Non-covalent)

PGA.1: 11 residues within 4Å: Chain A: N.12, K.14, H.96, E.166, G.210, G.211, S.212, L.231, V.232, G.233 Ligands: GOL.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.12, A:E.166, A:G.210, A:G.233 Water bridges: A:E.98 Salt bridges: A:K.14, A:K.14, A:H.96 PGA.5: 10 residues within 4Å: Chain B: N.12, K.14, H.96, E.166, I.171, G.211, S.212, L.231, G.233, G.234 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.12, B:S.212, B:G.233, B:G.234 Water bridges: B:G.211, B:G.211, B:G.211, B:V.213 Salt bridges: B:K.14, B:K.14, B:H.96

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: H.101, D.107, K.131, E.134, Q.147 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.107, A:K.131, A:K.131, A:Q.147 Water bridges: A:R.100, A:K.131 GOL.4: 6 residues within 4Å: Chain A: K.14, N.16, G.233, G.234 Chain B: A.74 Ligands: PGA.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.16, A:G.234 Water bridges: A:E.98, A:G.233, A:G.233, A:A.235 GOL.6: 4 residues within 4Å: Chain A: V.102, F.103 Chain B: Y.68, L.109 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.68 GOL.7: 8 residues within 4Å: Chain A: G.77 Chain B: N.66, C.67, Y.68, G.77, E.78, I.79, R.99 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.66, B:C.67, B:I.79, A:G.77

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 4 residues within 4Å: Chain A: N.72 Chain B: G.17, R.18, S.21 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.17, A:N.72 Water bridges: B:S.21, B:S.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romero, J.M., human triosephosphate isomerase mutant G122R. To Be Published

Release Date

2023-05-10

Peptides

Triosephosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Triosephosphate isomerase

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