SMTL ID : 7uxy.1

Isoreticular, interpenetrating co-crystal of protein variant Replication Initiator Protein REPE54 (L53G,Q54G,E55G) and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

monomer

Ligands

8 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: A.1 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: C.4 No protein-ligand interaction detected (PLIP) MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain B: G.26 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: G.13, C.14 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain A: T.10 Chain B: G.26, G.27 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain C: Q.246 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain C: E.89, D.93 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.89, C:D.93, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orun, A.R. et al., Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano (2023)

Release Date

2023-05-17

Peptides

Replication initiation protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

Replication initiation protein