SMTL ID : 7uxz.3 (2 other biounits)

Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain complexed with Chicoric acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: W.80 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain B: E.73, V.74, T.75 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.74 Water bridges: B:M.72

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain B: H.50, Q.53, D.98, Q.99, L.102 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mercaldi, G.F. et al., Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor. Sci Rep (2022)

Release Date

2022-06-22

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
EEE

B
FFF

Nucleoprotein

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