SMTL ID : 7uy4.1 (1 other biounit)

Aminoglycoside-modifying enzyme ANT-3,9 in complex with spectinomycin and AMP-PNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 19 residues within 4Å: Chain A: G.31, S.32, S.42, D.43, D.45, D.126, I.129, L.130, K.133, L.162, T.185, R.188, I.189, S.192, K.201, Y.227 Ligands: SMI.2, MG.3, MG.4 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.32, A:S.32, A:S.42, A:D.43, A:D.43, A:K.133, A:R.188, A:R.188, A:S.192, A:S.192, A:Y.227, A:Y.227 Water bridges: A:A.33, A:H.41, A:K.201, A:K.201, A:K.201, A:K.201 Salt bridges: A:K.133, A:K.201

1 x SMI: SPECTINOMYCIN(Non-covalent)

SMI.2: 11 residues within 4Å: Chain A: D.43, P.73, E.83, Q.104, E.107, W.108, D.126, D.178, N.181 Ligands: ANP.1, MG.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.73, A:E.107 Hydrogen bonds: A:E.83, A:D.178, A:N.181 Water bridges: A:D.45, A:D.45, A:K.201, A:K.201, A:K.201

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain A: D.43, D.45, E.83 Ligands: ANP.1, SMI.2, MG.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.43, A:D.45, A:E.83, H2O.2 MG.4: 5 residues within 4Å: Chain A: S.32, D.43, D.45 Ligands: ANP.1, MG.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.43, A:D.45, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, N. et al., Characterization of the spectinomycin deactivating enzyme ANT-3,9. To Be Published

Release Date

2023-05-10

Peptides

Aminoglycoside (3'') (9) adenylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminoglycoside (3'') (9) adenylyltransferase

Related Entries With Identical Sequence