SMTL ID : 7uyi.1 (1 other biounit)

Crystal structure of the computationally optimized broadly reactive H1 influenza hemagglutinin P1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 8 residues within 4Å: Chain A: N.68, E.70, E.90, N.91, C.94, K.223, R.225, G.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.223, A:G.226, A:R.225

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: N.280, N.291 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: T.271, N.273, Q.287 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain C: N.131, K.134, K.158 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.4: 6 residues within 4Å: Chain B: N.68, E.70, E.90, N.91, C.94, R.225 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.225

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.5: 9 residues within 4Å: Chain C: N.68, E.70, E.90, N.91, C.94, K.223, V.224, R.225, G.226 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.225

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: N.131, T.133, K.134, K.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.133 NAG.8: 1 residues within 4Å: Chain A: N.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.15 NAG.9: 1 residues within 4Å: Chain A: N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NAG.10: 3 residues within 4Å: Chain A: S.482, N.485, T.487 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.485 NAG.11: 1 residues within 4Å: Chain B: N.15 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.15 NAG.12: 1 residues within 4Å: Chain B: N.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.27 NAG.13: 4 residues within 4Å: Chain B: N.131, T.133, K.134, K.158 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.133, B:T.133 NAG.14: 2 residues within 4Å: Chain B: N.280, N.291 No protein-ligand interaction detected (PLIP) NAG.15: 1 residues within 4Å: Chain C: N.15 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dzimianski, J.V. et al., Structural insights into the broad protection against H1 influenza viruses by a computationally optimized hemagglutinin vaccine. Commun Biol (2023)

Release Date

2023-04-19

Peptides

COBRA P1 HA: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

COBRA P1 HA

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