SMTL ID : 7uz1.2 (1 other biounit)

Structure of beta-glycosidase from Sulfolobus solfataricus in complex with C5a-bromo-valienide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x OM0: (1R,2S,3R,4R)-5-bromo-6-(hydroxymethyl)cyclohex-5-ene-1,2,3,4-tetrol(Covalent)

OM0.1: 14 residues within 4Å: Chain A: Q.18, H.150, W.151, N.205, E.206, N.320, Y.322, F.359, W.361, E.387, W.425, E.432, W.433, F.441 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.387 Hydrogen bonds: A:Q.18, A:Q.18, A:H.150, A:N.205, A:W.425, A:E.432, A:W.433 Water bridges: A:R.79, A:N.430

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: W.36, L.47, R.164, V.218, G.225 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Danby, P.M. et al., Vinyl Halide-Modified Unsaturated Cyclitols are Mechanism-Based Glycosidase Inhibitors. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-04-05

Peptides

Beta-galactosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-galactosidase

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