SMTL ID : 7uzb.1

Structure of the SARS-CoV-2 S S1 doamin in complex with the mouse antibody Fab fragment, HSW-2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.331, P.579, Q.580, T.581 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.331, A:T.581 NAG.2: 3 residues within 4Å: Chain A: G.339, N.343, L.368 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.339, A:N.343 NAG.3: 2 residues within 4Å: Chain A: N.616, E.619 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.619 NAG.4: 5 residues within 4Å: Chain A: F.59, S.60, N.61, T.632, V.635 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.632 Hydrogen bonds: A:N.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity (2022)

Release Date

2022-12-07

Peptides

Spike glycoprotein: A
HSW-2 Fab heavy chain: B
HSW-2 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein

HSW-2 Fab heavy chain

HSW-2 Fab light chain

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