SMTL ID : 7v29.1 (1 other biounit)

Crystal structure of FGFR4 with a dual-warhead covalent inhhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x 5JR: N-[2-[[3-(3,5-dimethoxyphenyl)-2-oxidanylidene-1-[3-(4-propanoylpiperazin-1-yl)propyl]-4H-pyrimido[4,5-d]pyrimidin-7-yl]amino]phenyl]propanamide(Covalent)

5JR.1: 24 residues within 4Å: Chain A: L.31, G.32, E.33, C.35, V.39, R.41, A.59, K.61, E.78, M.82, I.92, V.106, V.108, E.109, C.110, A.111, G.114, R.174, L.177, A.187, D.188, F.189 Ligands: SO4.2, SO4.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:A.59, A:I.92, A:V.108, A:L.177 Hydrogen bonds: A:R.41, A:A.111, A:A.111, A:A.111, A:D.188, A:D.188

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: L.31, N.115, R.174 Ligands: 5JR.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.115 Water bridges: A:N.115 Salt bridges: A:R.174 SO4.3: 4 residues within 4Å: Chain A: R.121, R.124, G.245, S.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.246 Salt bridges: A:R.121, A:R.124 SO4.4: 6 residues within 4Å: Chain A: R.174, T.204, S.205, N.206, R.208 Ligands: 5JR.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.205, A:N.206, A:N.206 Water bridges: A:D.170, A:R.208 Salt bridges: A:R.174, A:R.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Structure-based design of a dual-warhead covalent inhibitor of FGFR4. Commun Chem (2022)

Release Date

2022-03-30

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fibroblast growth factor receptor 4

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