SMTL ID : 7v2a.1

SARS-CoV-2 Spike trimer in complex with XG014 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.40 Å

Oligo State

hetero-3-3-3-mer

Ligands

24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: H.655, N.657 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.616 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain A: N.122, T.124, N.125, V.127 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.164, N.165 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: T.108, N.234, T.236 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain A: N.331, Q.580 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: N.343 Chain C: N.104, F.108 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain A: N.282 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain D: H.655, N.657 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain D: N.616 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain D: N.122, T.124, N.125, V.127 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain D: N.164, N.165 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain D: T.108, N.234, T.236 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain D: N.331, Q.580 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain D: N.343 Chain H: N.104, F.108 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain D: N.282 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain E: H.655, N.657 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain E: N.616 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain E: N.122, T.124, N.125, V.127 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain E: N.164, N.165 Ligand excluded by PLIP NAG.21: 3 residues within 4Å: Chain E: T.108, N.234, T.236 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain E: N.331, Q.580 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain E: N.343 Chain I: N.104, F.108 Ligand excluded by PLIP NAG.24: 3 residues within 4Å: Chain E: N.280, E.281, N.282 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., An ultrapotent pan-beta-coronavirus lineage B ( beta-CoV-B) neutralizing antibody locks the receptor-binding domain in closed conformation by targeting its conserved epitope. Protein Cell (2022)

Release Date

2021-10-20

Peptides

Spike glycoprotein: ADE
The light chain of XG014 Fab: BFG
The heavy chain of XG014: CHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

E
C

B
D

F
F

G
H

C
E

H
G

I
I

Spike glycoprotein

The light chain of XG014 Fab

The heavy chain of XG014

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