SMTL ID : 7v2b.1

Crystal Structure of VpsR display novel dimeric architecture and c-di-GMP binding: mechanistic implications in oligomerization, ATPase activity and DNA binding.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 13 residues within 4Å: Chain A: E.192, S.193, G.194, T.195, G.196, K.197, E.198, T.199, K.202, N.257, V.373, R.374, M.377 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.194, A:T.195, A:G.196, A:K.197, A:E.198, A:T.199, A:T.199, A:K.202, A:N.257 Salt bridges: A:K.197, A:R.374, A:R.374 pi-Cation interactions: A:K.202 GTP.2: 10 residues within 4Å: Chain B: G.194, T.195, G.196, K.197, E.198, T.199, K.202, S.217, V.373, M.377 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.194, B:T.195, B:T.195, B:G.196, B:K.197, B:E.198, B:K.202, B:S.217 Salt bridges: B:K.197 pi-Cation interactions: B:K.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chakrabortty, T. et al., Crystal Structure of VpsR Revealed Novel Dimeric Architecture and c-di-GMP Binding Site: Mechanistic Implications in Oligomerization, ATPase Activity and DNA Binding. J.Mol.Biol. (2022)

Release Date

2022-04-06

Peptides

VpsR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

VpsR

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