SMTL ID : 7v3k.1 (1 other biounit)

crystal structure of MAJ1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-dimer

Ligands

4 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 10 residues within 4Å: Chain A: W.66, T.180, L.182, T.196, I.197, V.200, L.201, Q.208 Chain B: S.34 Ligands: OLA.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.66, A:L.182, A:T.196, A:I.197, A:V.200 OLA.3: 12 residues within 4Å: Chain A: K.30, T.65, W.66, G.184, L.185, Y.237, E.239, V.240, D.272, H.273, L.274 Ligands: OLA.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.66, A:V.240, A:L.274, A:L.274 Hydrogen bonds: A:Y.237, A:E.239, A:H.273 OLA.9: 20 residues within 4Å: Chain A: L.31, S.34, L.35, P.104 Chain B: T.65, W.66, S.141, T.176, T.180, L.182, L.185, L.192, T.196, I.197, V.200, L.201, A.205, Q.208, V.240 Ligands: OLA.10 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.66, B:T.176, B:L.182, B:L.185, B:L.192, B:V.200, B:L.201, B:Q.208 OLA.10: 15 residues within 4Å: Chain B: F.26, K.30, T.65, W.66, L.100, L.106, W.140, G.184, L.185, E.239, V.240, H.273, L.274 Ligands: GOL.8, OLA.9 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.66, B:L.100, B:L.185, B:V.240, B:L.274

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: L.249, T.250, V.257, N.258, N.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.258, A:N.259, A:N.259 NAG.7: 5 residues within 4Å: Chain B: L.249, T.250, V.257, N.258, N.259 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.257, B:N.259, B:N.259

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: E.22, R.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.22, A:R.82 GOL.5: 4 residues within 4Å: Chain A: Q.191 Chain B: Y.32, L.35, A.36 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.32 GOL.8: 10 residues within 4Å: Chain B: Y.237, D.238, E.239, V.240, D.272, H.273, L.274, V.306, L.307 Ligands: OLA.10 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.239, B:V.240, B:H.273

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 2 residues within 4Å: Chain A: S.141, H.273 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.141, A:H.273, H2O.1 CA.11: 4 residues within 4Å: Chain B: D.94, E.95, G.101, L.106 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.94, B:E.95, B:G.101, H2O.7, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.H. et al., crystal structure of MAJ1. To Be Published

Release Date

2022-08-17

Peptides

Putative lipase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative lipase

Related Entries With Identical Sequence