SMTL ID : 7v3z.1

Structure of cannabinoid receptor type 1(CB1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

monomer

Ligands

1 x 9GF: 2-[(1R,2R,5R)-5-hydroxy-2-(3-hydroxypropyl)cyclohexyl]-5-(2-methyloctan-2-yl)phenol(Non-covalent)

9GF.1: 17 residues within 4Å: Chain A: F.72, S.75, F.76, F.79, H.80, F.91, K.94, L.95, V.98, I.169, F.170, P.171, Y.177, L.178, W.181, F.403, S.407 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.72, A:F.76, A:F.79, A:F.79, A:F.91, A:L.95, A:F.170, A:F.170, A:F.170, A:Y.177, A:L.178, A:W.181, A:W.181, A:W.181, A:F.403 Hydrogen bonds: A:S.75, A:K.94, A:S.407 pi-Stacking: A:F.72, A:F.170

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 12 residues within 4Å: Chain A: L.56, S.60, V.63, L.67, I.71, G.97, A.100, S.101, F.139, C.140, W.143, I.147 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.63, A:L.67, A:I.71, A:A.100, A:F.139, A:W.143, A:W.143, A:W.143, A:I.147 Hydrogen bonds: A:L.56

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.3: 21 residues within 4Å: Chain A: S.217, T.218, T.219, G.220, N.221, T.222, S.265, T.266, W.267, G.268, D.269, Q.275, C.300, G.301, D.302, W.305, Y.307, F.308, C.309, D.334, G.335 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.267, A:W.267 Hydrogen bonds: A:T.218, A:T.219, A:T.219, A:N.221, A:N.221, A:T.222, A:T.222, A:S.265, A:S.265, A:T.266, A:G.301, A:D.302, A:Y.307, A:C.309 pi-Stacking: A:W.305, A:W.305, A:W.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., A Genetically Encoded F-19 NMR Probe Reveals the Allosteric Modulation Mechanism of Cannabinoid Receptor 1. J.Am.Chem.Soc. (2021)

Release Date

2021-11-24

Peptides

fusion protein of Cannabinoid receptor 1 and Flavodoxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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fusion protein of Cannabinoid receptor 1 and Flavodoxin