SMTL ID : 7v4r.1

The crystal structure of KFDV NS3H bound with Pi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: T.31, E.116 Ligands: PO4.3, PO4.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.31, A:E.116

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: G.27, G.29, K.30, T.31, H.32, R.291 Ligands: PO4.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.29, A:G.29, A:T.31, A:H.32 Salt bridges: A:H.32, A:R.291 PO4.3: 11 residues within 4Å: Chain A: H.25, P.26, G.27, S.28, G.29, K.30, T.31, R.291 Ligands: NI.1, PO4.2, PO4.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.27, A:S.28, A:G.29, A:K.30, A:T.31, A:T.31 Salt bridges: A:K.30, A:R.291 PO4.4: 9 residues within 4Å: Chain A: P.26, K.30, E.116, T.146, A.147, Q.284, R.288 Ligands: NI.1, PO4.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.116, A:E.116, A:T.146, A:A.147, A:Q.284, A:R.288 Water bridges: A:T.31, A:R.288, A:R.288 Salt bridges: A:K.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, C. et al., Kyasanur Forest disease virus NS3 helicase: Insights into structure, activity, and inhibitors. Int.J.Biol.Macromol. (2023)

Release Date

2022-08-17

Peptides

Serine protease NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine protease NS3

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