SMTL ID : 7v4z.6 (5 other biounits)

Structure of Horcolin native form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.14, G.15, D.90, G.134, A.135, F.136, D.138 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.15, A:G.134, A:A.135, A:F.136, A:F.136 GOL.2: 5 residues within 4Å: Chain A: D.19, V.20, Q.21, S.55 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.21 Water bridges: A:S.55 GOL.3: 7 residues within 4Å: Chain A: G.35, A.36, I.37, D.39, G.63, G.64, F.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.35, A:A.36, A:I.37, A:I.37 GOL.6: 7 residues within 4Å: Chain B: G.14, G.15, D.90, G.134, A.135, F.136, D.138 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.134, B:A.135, B:F.136, B:F.136 Water bridges: B:G.14, B:G.15, B:D.138

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Ligands: EDO.5 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: G.56, I.57 Ligands: GOL.2, EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narayanan, V. et al., Structure and Carbohydrate Recognition by the Nonmitogenic Lectin Horcolin. Biochemistry (2022)

Release Date

2022-03-09

Peptides

Horcolin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

Horcolin

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