SMTL ID : 7v61.1

ACE2 -Targeting Monoclonal Antibody as Potent and Broad-Spectrum Coronavirus Blocker

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

14 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.278, T.280, E.281 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: N.65, T.67, E.69, N.70, Q.352 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: K.38, N.102, V.105 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: Q.93, Q.113, N.115 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain B: N.444 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain B: S.432, S.557, N.558 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.432 NAG-NAG.7: 4 residues within 4Å: Chain B: N.171, N.702, S.704, D.705 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.171 NAG-NAG.8: 3 residues within 4Å: Chain E: N.278, T.280, E.281 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 5 residues within 4Å: Chain F: N.65, T.67, E.69, N.70, Q.352 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 3 residues within 4Å: Chain F: K.38, N.102, V.105 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 3 residues within 4Å: Chain F: Q.93, Q.113, N.115 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 1 residues within 4Å: Chain F: N.444 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 3 residues within 4Å: Chain F: S.432, S.557, N.558 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:S.432 NAG-NAG.14: 4 residues within 4Å: Chain F: N.171, N.702, S.704, D.705 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.171

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 2 residues within 4Å: Chain A: E.177, N.178 No protein-ligand interaction detected (PLIP) NAG.16: 5 residues within 4Å: Chain A: R.198, N.202, S.204, Q.214, N.496 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.198, A:N.496 NAG.17: 2 residues within 4Å: Chain A: G.373, N.374 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.374 NAG.18: 3 residues within 4Å: Chain A: Q.385, N.388, Y.395 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.385, A:Q.385 NAG.19: 1 residues within 4Å: Chain B: N.334 No protein-ligand interaction detected (PLIP) NAG.21: 2 residues within 4Å: Chain E: E.177, N.178 No protein-ligand interaction detected (PLIP) NAG.22: 5 residues within 4Å: Chain E: R.198, N.202, S.204, Q.214, N.496 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.198, E:N.496 NAG.23: 2 residues within 4Å: Chain E: G.373, N.374 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.374 NAG.24: 3 residues within 4Å: Chain E: Q.385, N.388, Y.395 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Q.385, E:Q.385 NAG.25: 1 residues within 4Å: Chain F: N.334 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.20: 3 residues within 4Å: Chain B: H.386, E.387, E.414 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.414 ZN.26: 3 residues within 4Å: Chain F: H.386, E.387, E.414 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:E.414

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., ACE2-targeting monoclonal antibody as potent and broad-spectrum coronavirus blocker. Signal Transduct Target Ther (2021)

Release Date

2022-06-22

Peptides

Sodium-dependent neutral amino acid transporter B(0)AT1: AE
Angiotensin-converting enzyme 2: BF
3E8: CG
3E8: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
C

B
B

F
D

C
H

G
I

D
K

H
M

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Sodium-dependent neutral amino acid transporter B(0)AT1

Angiotensin-converting enzyme 2

3E8

3E8

Related Entries With Identical Sequence