SMTL ID : 7v6z.1

Cryo-EM structure of Patched1 (V1084A mutant) in lipid nanodisc, 3.64 angstrom (reprocessed with the dataset of 7dzp)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.893, L.897 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.129 NAG.3: 3 residues within 4Å: Chain A: N.337, T.339, G.340 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.339, A:G.340 NAG.4: 1 residues within 4Å: Chain A: N.402 No protein-ligand interaction detected (PLIP)

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.5: 9 residues within 4Å: Chain A: G.195, E.196, Y.212, P.213, L.318, S.319, M.323, P.824, V.825 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.212, A:P.824, A:V.825

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, Y. et al., Cryo-EM study of patched in lipid nanodisc suggests a structural basis for its clustering in caveolae. Structure (2021)

Release Date

2021-09-22

Peptides

Protein patched homolog 1,Protein patched homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Protein patched homolog 1,Protein patched homolog 1