SMTL ID : 7v80.1

Local refinement of SARS-CoV-2 S-Beta variant (B.1.351) RBD and Angiotensin-converting enzyme 2 (ACE2) ectodomain

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain B: N.90 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: Q.81, Q.101, N.103 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: S.317, S.420, N.546 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.328, T.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.328 NAG.5: 4 residues within 4Å: Chain A: F.335, G.336, F.339, N.340 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.339 Hydrogen bonds: A:N.340 NAG.6: 3 residues within 4Å: Chain B: N.53, T.55, Q.340 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.53 NAG.7: 1 residues within 4Å: Chain B: N.322 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.322 NAG.8: 2 residues within 4Å: Chain B: N.432, E.433 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, T.J. et al., Local refinement of SARS-CoV-2 S-Beta variant (B.1.351) RBD and Angiotensin-converting enzyme 2 (ACE2) ectodomain. To Be Published

Release Date

2021-10-06

Peptides

Spike glycoprotein: A
Angiotensin-converting enzyme 2,Green fluorescent protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

Spike glycoprotein

Angiotensin-converting enzyme 2,Green fluorescent protein

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