SMTL ID : 7v84.1

Local refinement of SARS-CoV-2 S-Gamma variant (P.1) RBD and Angiotensin-converting enzyme 2 (ACE2) ectodomain

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: F.338, F.342, N.343 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain B: N.90 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: Q.81, Q.101, N.103 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: N.322, M.323, Q.325 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain B: S.420, N.546 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain A: N.331 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.331, A:N.331 NAG.7: 5 residues within 4Å: Chain B: N.53, T.55, E.57, N.58, Q.340 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.53, B:Q.340 NAG.8: 3 residues within 4Å: Chain B: D.431, N.432, E.433 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.432, B:E.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, T.J. et al., Local refinement of SARS-CoV-2 S-Gamma variant (P.1) RBD and Angiotensin-converting enzyme 2 (ACE2) ectodomain. To Be Published

Release Date

2021-10-06

Peptides

Spike glycoprotein: A
Angiotensin-converting enzyme 2,Green fluorescent protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

Spike glycoprotein

Angiotensin-converting enzyme 2,Green fluorescent protein

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