SMTL ID : 7v8w.1

Crystal structure of PsEst3 S128A variant complexed with malonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 8 residues within 4Å: Chain A: G.42, F.43, R.44, G.45, H.127, A.128, R.129, H.227 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.43 Hydrogen bonds: A:F.43, A:R.44, A:G.45, A:R.129 Salt bridges: A:R.44, A:H.127, A:H.227, A:H.227

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: H.256 Ligands: ACT.3 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: R.121 Ligands: EDO.2, ACT.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.121 ACT.4: 5 residues within 4Å: Chain A: P.35, R.121, I.253, H.256 Ligands: ACT.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Son, J. et al., Structural and biochemical insights into PsEst3, a new GHSR-type esterase obtained from Paenibacillus sp. R4. Iucrj (2023)

Release Date

2022-08-31

Peptides

esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

esterase

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