SMTL ID : 7v9z.1

PaOrn Oligoribonuclease native structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 4 residues within 4Å: Chain A: R.112, Y.116 Chain B: C.109, R.113 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:Y.116

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: N.106, S.107, S.134 Chain B: Y.128, R.129 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.106, A:S.107, A:S.107, A:S.134, B:Y.128 Water bridges: A:K.137, B:R.129 Salt bridges: A:K.137, B:R.129 SO4.3: 3 residues within 4Å: Chain A: Y.128, R.129 Chain B: K.137 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Water bridges: A:R.129, A:R.129, A:R.129, A:R.129, B:K.137 Salt bridges: A:R.129, B:K.137 Hydrogen bonds: B:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., PaOrn Oligoribonuclease native structure. To Be Published

Release Date

2022-09-07

Peptides

Oligoribonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oligoribonuclease