SMTL ID : 7va2.1

PaOrn Oligoribonuclease D11A mutant with product GMP complex structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 4 residues within 4Å: Chain A: R.112, Y.116 Chain B: C.109, R.113 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:Y.116

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: N.106, S.107, S.134 Chain B: Y.128, R.129 Ligands: 5GP.3 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.106, A:S.107, A:S.107, A:S.134 Salt bridges: A:K.137, B:R.129

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.3: 11 residues within 4Å: Chain A: L.12, E.13, M.14, G.16, L.17, D.58, W.60, N.61, H.65, D.162 Ligands: PO4.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.13, A:M.14, A:M.14, A:G.16, A:N.61, A:D.162 Salt bridges: A:D.58 pi-Stacking: A:W.60, A:W.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., PaOrn Oligoribonuclease D11A mutant with product GMP complex structure. To Be Published

Release Date

2022-09-07

Peptides

Oligoribonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oligoribonuclease

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