SMTL ID : 7va3.1

PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x G- G: RNA (5'-R(P*GP*G)-3')(Non-covalent)

G-G.1: 15 residues within 4Å: Chain A: L.12, E.13, M.14, G.16, L.17, D.58, W.60, N.61, H.65, N.106, S.107, Q.110, S.134 Chain B: Y.128, R.129 Protein-ligand interaction information (PLIP) not available

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 4 residues within 4Å: Chain A: R.112, Y.116 Chain B: C.109, R.113 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:Y.116

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 2 residues within 4Å: Chain A: K.137, R.148 No protein-ligand interaction detected (PLIP) MN.4: 2 residues within 4Å: Chain A: Y.128, R.129 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure. To Be Published

Release Date

2022-09-07

Peptides

Oligoribonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oligoribonuclease

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