SMTL ID : 7vcp.1

Frischella perrara beta-fructofuranosidase in complex with fructose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FRU: beta-D-fructofuranose(Non-covalent)

FRU.1: 11 residues within 4Å: Chain A: N.39, D.40, Q.56, W.64, F.99, S.100, R.161, D.162, E.216, Y.278, W.299 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.39, A:W.64, A:S.100, A:D.162, A:E.216, A:E.216 FRU.5: 11 residues within 4Å: Chain B: N.39, D.40, Q.56, W.64, F.99, S.100, R.161, D.162, E.216, Y.278, W.299 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.39, B:W.64, B:S.100, B:D.162, B:E.216, B:E.216

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: P.154, F.200 No protein-ligand interaction detected (PLIP) PEG.4: 6 residues within 4Å: Chain A: Y.51, D.76, H.286, D.287, R.289, E.335 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.286, A:E.335 PEG.6: 2 residues within 4Å: Chain B: P.154, F.200 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.190 PEG.8: 6 residues within 4Å: Chain B: Y.51, D.76, H.286, D.287, R.289, E.335 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.51, B:H.286

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 9 residues within 4Å: Chain A: I.355, D.390, G.391, K.392, L.396, F.467, F.469, E.471 Chain B: Y.412 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.471 Water bridges: A:G.391, A:K.392 1PE.7: 9 residues within 4Å: Chain A: Y.412 Chain B: I.355, D.390, G.391, K.392, L.396, F.467, F.469, E.471 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.391, B:K.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubota, A. et al., Enzymatic and structural characterization of beta-fructofuranosidase from the honeybee gut bacterium Frischella perrara. Appl.Microbiol.Biotechnol. (2022)

Release Date

2022-03-09

Peptides

Sucrose-6-phosphate hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Sucrose-6-phosphate hydrolase

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