SMTL ID : 7ve6.1

N-terminal domain of VraR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

homo-dimer

Ligands

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)

BEF.1: 9 residues within 4Å: Chain A: D.10, D.55, L.56, L.57, T.83, S.84, F.85, K.105 Ligands: MG.2 No protein-ligand interaction detected (PLIP) BEF.3: 9 residues within 4Å: Chain B: D.10, D.55, L.56, L.57, T.83, S.84, F.85, K.105 Ligands: MG.4 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.10, D.55, L.57, M.58 Ligands: BEF.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.10, A:D.10, A:D.55, A:L.57 MG.4: 7 residues within 4Å: Chain B: D.9, D.10, H.11, D.55, L.57, K.105 Ligands: BEF.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.10, B:D.55, B:L.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, J.V. et al., Structural insights into DNA binding domain of vancomycin-resistance-associated response regulator in complex with its promoter DNA from Staphylococcus aureus. Protein Sci. (2022)

Release Date

2022-05-18

Peptides

Response regulator protein VraR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Response regulator protein VraR