- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 15 x R16: HEXADECANE(Non-covalent)
- 3 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
Y01.6: 8 residues within 4Å:- Chain A: T.496, L.497, A.500, M.501, H.503, N.1350, V.1351, L.1352
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:M.501, A:L.1352
- Salt bridges: A:H.503
Y01.12: 7 residues within 4Å:- Chain A: N.299, I.300, L.301, V.1486, F.1492
- Ligands: R16.10, R16.13
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.300, A:L.301, A:V.1486, A:F.1492, A:F.1492
Y01.21: 7 residues within 4Å:- Chain A: I.1165, A.1168, R.1179, F.1611, F.1641
- Ligands: R16.15, R16.16
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:I.1165, A:I.1165, A:F.1611, A:F.1641, A:F.1641
- Salt bridges: A:R.1174, A:R.1179, A:R.1179
- 1 x PT5: [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate(Non-covalent)
PT5.22: 16 residues within 4Å:- Chain A: S.544, S.545, F.546, N.547, L.580, L.583, R.584, K.587, W.592, L.595, R.596, V.599, L.602, V.1288, F.1292, F.1406
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:F.546, A:L.580, A:L.583, A:W.592, A:W.592, A:L.595, A:V.599, A:L.602, A:V.1288, A:F.1292, A:F.1406, A:F.1406, A:F.1406
- Hydrogen bonds: A:S.544, A:S.545, A:S.545, A:F.546, A:N.547, A:R.584, A:R.584, A:R.596, A:R.596
- Salt bridges: A:K.532, A:R.584, A:K.587, A:K.587, A:R.596
- 1 x 6I7: 5-(4-chlorophenyl)-1-(2-methoxyphenyl)-3-(2,2,6,6-tetramethyloxan-4-yl)pyrazole(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.24: 4 residues within 4Å:- Chain A: E.314, E.663, E.1365, G.1654
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.314, A:E.663, A:E.1365, A:E.1365
CA.25: 4 residues within 4Å:- Chain A: D.122
- Chain B: S.261, S.263, T.331
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Metal complexes: A:D.122, B:S.263, B:T.331
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.26: 3 residues within 4Å:- Chain B: L.89, N.92, E.199
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.89
- Hydrogen bonds: B:N.92, B:E.199
NAG.27: 1 residues within 4Å:- Chain B: N.324
No protein-ligand interaction detected (PLIP)NAG.28: 2 residues within 4Å:- Chain B: N.346, N.348
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:N.346
NAG.29: 4 residues within 4Å:- Chain B: T.587, F.588, R.589, N.604
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:T.587
NAG.30: 4 residues within 4Å:- Chain B: E.80, A.83, R.84, N.613
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:A.83, B:R.84
- Hydrogen bonds: B:E.80, B:R.84, B:N.613
NAG.31: 4 residues within 4Å:- Chain B: N.675, T.677, E.678, L.681
No protein-ligand interaction detected (PLIP)NAG.32: 1 residues within 4Å:- Chain B: N.888
No protein-ligand interaction detected (PLIP)NAG.33: 6 residues within 4Å:- Chain B: V.107, R.114, N.120, N.184, W.185, S.187
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:V.107
- Hydrogen bonds: B:R.114, B:N.120, B:S.187
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, Y. et al., Closed-state inactivation and pore-blocker modulation mechanisms of human Ca V 2.2. Cell Rep (2021)
- Release Date
- 2021-11-03
- Peptides
- Voltage-dependent N-type calcium channel subunit alpha-1B: A
Voltage-dependent calcium channel subunit alpha-2/delta-1: B
Voltage-dependent L-type calcium channel subunit beta-1: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 15 x R16: HEXADECANE(Non-covalent)
- 3 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- 1 x PT5: [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate(Non-covalent)
- 1 x 6I7: 5-(4-chlorophenyl)-1-(2-methoxyphenyl)-3-(2,2,6,6-tetramethyloxan-4-yl)pyrazole(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dong, Y. et al., Closed-state inactivation and pore-blocker modulation mechanisms of human Ca V 2.2. Cell Rep (2021)
- Release Date
- 2021-11-03
- Peptides
- Voltage-dependent N-type calcium channel subunit alpha-1B: A
Voltage-dependent calcium channel subunit alpha-2/delta-1: B
Voltage-dependent L-type calcium channel subunit beta-1: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.